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Quick installation of cufflinks:
Step 1: Update system:
sudo apt-get update
Step 2: Install: cufflinks
Ater updaing the OS run following command to install the packae:
sudo apt-get install cufflinks
Package Details | |
| Package: | cufflinks |
| Version: | 1.3.0-1ubuntu2 |
| Maintainer: | Ubuntu Developers |
| Home page: | http://cufflinks.cbcb.umd.edu/ |
| Description: | Transcript assembly, differential expression and regulation for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one. Homepage: http://cufflinks.cbcb.umd.edu/ |
| Distro: | Ubuntu 12.04 LTS |
| Release: | |
| Repo/Section: | multiverse/science |
How to install cufflinks on Ubuntu 12.04 LTS?
First of all update your system with the command:
sudo apt-get update
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Above command will download the package lists for Ubuntu 12.04 LTS on your system. This will update the list of newest versions of packages and its dependencies on your system.
After downloading the latest package list with the help of above you can run the installation process.
If cufflinks is not installed on your compter then the command 'dpkg -L cufflinks' will give followin error.
deepak@deepak-VirtualBox:~$ dpkg -L cufflinks Package `cufflinks' is not installed. Use dpkg --info (= dpkg-deb --info) to examine archive files, and dpkg --contents (= dpkg-deb --contents) to list their contents. deepak@deepak-VirtualBox:~$
Installing cufflinks:
After system update use the following command to install cufflinks:
sudo apt-get install cufflinks
Above command will confirm before installing the package on your Ubuntu 12.04 LTS Operating System. If you are not already logged in as su, installer will ask you the root password. After completion of the installation you can use the package on your system.
How to uninstall/remove cufflinks from Ubuntu 12.04 LTS?
Now we will see the commands for uninstalling the cufflinks from Ubuntu 12.04 LTS. For uninstalling this package you can easily use the apt command and remove the package from Linux Operating System.
To remove the cufflinks following command is used:
sudo apt-get remove cufflinks
Following command is used to remove the cufflinks package along with its dependencies:
sudo apt-get remove --auto-remove cufflinks
This will remove cufflinks and all its dependent packages which is no longer needed in the system.
Completely removing cufflinks with all configuration files:
Following command should be used with care as it deletes all the configuration files and data:
sudo apt-get purge cufflinks
or you can use following command also:
sudo apt-get purge --auto-remove cufflinks
Above command will remove all the configuration files and data associated with cufflinks package. You can can't recover the delete data, so, use this command with care.
